g++ -c -Wall -Wno-sign-compare -ansi -pedantic -O3 -DZIPINPUT -o genbank.o genbank.cc -I../include
In file included from genbank.cc:15:
In file included from ../include/genbank.hh:19:
In file included from ../include/gene.hh:16:
../include/hints.hh:147:7: warning: equality comparison result unused [-Wunused-comparison]
name == "";
~~~~~^evoe? July 19, 2015, at 05:12 PM
../include/hints.hh:147:7: note: use '=' to turn this equality comparison into an assignment
name == "";
^~
=
In file included from genbank.cc:15:
In file included from ../include/genbank.hh:19:
../include/gene.hh:369:10: warning: 'Gene::almostIdenticalTo' hides overloaded virtual function [-Woverloaded-virtual]
bool almostIdenticalTo(Gene *other);
^
../include/gene.hh:295:18: note: hidden overloaded virtual function 'Transcript::almostIdenticalTo' declared here: type mismatch at 1st parameter
('Transcript *' vs 'Gene *')
virtual bool almostIdenticalTo(Transcript *other);
^
../include/gene.hh:386:10: warning: 'Gene::printEvidence' hides overloaded virtual function [-Woverloaded-virtual]
void printEvidence();
^
../include/gene.hh:300:18: note: hidden overloaded virtual function 'Transcript::printEvidence' declared here: different qualifiers (const vs none)
virtual void printEvidence() const {}; // implemented only for coding genes
^
In file included from genbank.cc:15:
../include/genbank.hh:26:10: fatal error: 'boost/iostreams/filtering_stream.hpp' file not found
include <boost/iostreams/filtering_stream.hpp>
^
3 warnings and 1 error generated.
make: *** [genbank.o] Error 1
Originally posted by Lizzy in the old forum on 20.07.2015 - 14:13
If you use the DZIPINPUT option you need to install the boost library fist. If you do not use zipped input files I would recommend to turn that option off by setting "ZIPINPUT = false" in the file common.mk and type "make clean all" to try again.
I hope that helps. Let us know if it still doesn't work
Originally posted by evoe in the old forum on 20.07.2015 - 15:41
Hi Lizzy,
Thank you for your kind advice.
However, I already installed boost and I followed the step you suggested (turn that option off by setting "ZIPINPUT = false" in the file common.mk),
I got the same error message.
Originally posted by Lizzy in the old forum on 04.08.2015 - 15:30
oh, I just tried and realized it doesn't work by setting ZIPINPUT = false. It still compiles with ZIPINPUT option turned on. That's probably a bug. Please try commenting out that line in common.mk, so that the line is ignored: "# ZIPINPUT = false". That should work, hopefully. Sorry for the inconvenience.
Originally posted by evoe in the old forum on 12.08.2015 - 06:58
I tried commenting out "# ZIPINPUT = false" line, but I got the same error.
I gave up running Augutus3.1 on Mac OSX 10.10.4, now I utilize it on Biolinux8.
Thank you.