Augustus [gene prediction]

Bioinformatics Group of the Institute for Mathematics and Computer Science of the University of Greifswald

web interface WebAUGUSTUS accuracy results download AUGUSTUS data sets predictions references

AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences. It can be run on this web server, on a new web server for larger input files or be downloaded and run locally. It is open source so you can compile it for your computing platform. You can now run AUGUSTUS on the German MediGRID. This enables you to submit larger sequence files and allows to use protein homology information in the prediction. The MediGRID requires an instant easy registration by email for first-time users.

Features/News:

Species:

AUGUSTUS has currently been trained on species specific training sets to predict genes in the following species. Note that for closely related species usually only one version is necessary. For example, the human version is good for all mammals. Contributions.
animals:                 alveolata:                 plants and algae:            fungi:
Acyrthosiphon pisum
Aedes aegypti
Amphimedon queenslandica
Apis mellifera
Bombus terrestris
Brugia malayi
Caenorhabditis elegans
Callorhinchus milii
Culex pipiens
Drosophila melagonaster
Gallus gallus
Heliconius melpomene
Homo sapiens
Nasonia vitripennis
Petromyzon marinus
Rhodnius prolixus
Schistosoma mansoni
Tribolium castaneum
Tetrahymena thermophila
Toxoplasma gondii
Arabidopsis thaliana
Chlamydomonas reinhardtii
Galdieria sulphuraria
(Nicotiana tabacum)
Solanum lycopersicum
Theobroma cacao
Zea mays
Aspergillus fumigatus
Aspergillus nidulans
Aspergillus oryzae
Aspergillus terreus
Botrytis cinerea
Candida albicans
Candida guilliermondii
Candida tropicalis
Chaetomium globosum
Coccidioides immitis
Conidiobolus coronatus
Coprinus cinereus
Cryptococcus neoformans
Debaryomyces hansenii
Encephalitozoon cuniculi
Eremothecium gossypii
Fusarium graminearum
Histoplasma capsulatum
Kluyveromyces lactis
Laccaria bicolor
Lodderomyces elongisporus
Magnaporthe grisea
Neurospora crassa
Phanerochaete chrysosporium
Pichia stipitis
Rhizopus oryzae
Pneumocystis jirovecii
Saccharomyces cerevisiae
Schizosaccharomyces pombe
Ustilago maydis
Verticillium longisporum
Yarrowia lipolytica

Contact:

Mario Stanke <mario.stanke@uni-greifswald.de>