Data Input for Running AUGUSTUS

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Use this form to submit your data for running AUGUSTUS on new genomic data with already available pre-trained parameters.

Please read the prediction tutorial before submitting a job for the first time. Example data for this form is available here. You may also use the button below to insert sample data. Please note that you will always need to enter the verification string at the bottom of the page, yourself, in order to submit a job!

We recommend that you specify an e-mail address.

e-mail

Help

If I provide an e-mail address, I consent to the processing of my personal data in accordance with the Data Privacy Protection declaration.
I agree to receive e-mails that are related to the particular AUGUSTUS job that I submitted.

You must either upload a *.tar.gz archive with AUGUSTUS species parameters from your computer or specify a project identifier: Help
AUGUSTUS species parameters *
Upload an archive file (max. 100 MB): Help
or
specify a project identifier:	Help
or
select an organism:	Help
You must either upload a genome file from your computer or specify a web link to a genome file: Help
Genome file * (max. 250000 scaffolds) Help
Upload a file (max. 100 MB):
or
specify web link to genome file (max. 1 GB):
You may (optionally) also specify one or several of the following files that contain external evidence for protein coding genes: Help
cDNA file *Non-commercial users only* Help
Upload a file (max. 100 MB):
or
specify web link to cDNA file (max. 1 GB):

Hints file Help
Upload a file (max. 200 MB):

The following checkboxes allow you to modify the gene prediction behavior of AUGUSTUS:

UTR prediction Help

predict UTRs (requires species-specific UTR parameters)

Report genes on

both strands forward strand only reverse strand only

Alternative transcripts:

none few medium many

Allowed gene structure: Help

predict any number of (possibly partial) genes only predict complete genes only predict complete genes - at least one predict exactly one gene
ignore conflicts with other strand

I am not submitting personalized human sequence data (mandatory). * Help

We use a verification string to figure out whether you are a human person. Please type the text in the image below into the text field next to the image.

*) mandatory input arguments