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Data Input for Running AUGUSTUS

Use this form to submit your data for running AUGUSTUS on new genomic data with already available pre-trained parameters.

Please read the prediction tutorial before submitting a job for the first time. Example data for this form is available here. You may also use the button below to insert sample data. Please note that you will always need to enter the verification string at the bottom of the page, yourself, in order to submit a job!

Current problem: Regrettably, our server is currently connected to the internet via a rather unreliable connection. This may cause connection timeouts (caused by server side) when uploading big files. Please use the web link upload option, instead, if you experience such problems. We apologize for the inconvenience!

We recommend that you specify an E-mail address.

  Help

You must either upload a *.tar.gz archive with AUGUSTUS species parameters from your computer or specify a project identifier:   Help

Upload an archive file (max. 100 MB):   Help
 or 
Help
 or 
Help

You must either upload a genome file from your computer or specify a web link to a genome file:   Help

Upload a file (max. 100 MB):
 or 

You may (optionally) also specify one or several of the following files that contain external evidence for protein coding genes: Help

Upload a file (max. 100 MB):
 or 

Upload a file (max. 200 MB):

The following checkboxes allow you to modify the gene prediction behavior of AUGUSTUS:

predict UTRs (requires species-specific UTR parameters)

both strands     forward strand only     reverse strand only

none     few     medium     many

predict any number of (possibly partial) genes
only predict complete genes
only predict complete genes - at least one
predict exactly one gene

ignore conflicts with other strand

We use a verification string to figure out whether you are a human person. Please type the text in the image below into the text field next to the image.
    *

*) mandatory input arguments



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CONTACT
Institute for Mathematics und Computer Sciences
Bioinformatics Group
Walther-Rathenau-Straße 47
17487 Greifswald
Germany
Tel.: +49 (0)3834 86 - 46 24
Fax: +49 (0)3834 86 - 46 40

augustus-web@uni-greifswald.de